PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG088100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 283aa    MW: 29895.9 Da    PI: 6.6076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG088100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08132176554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pavir.2KG088100.1.p 132 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 176
                          99***********************7.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-15125186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-10125181No hitNo description
PROSITE profilePS5088815.77127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-14129187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAGQQPPPGG AEDDFLEHFF AFPSAASAGA GGGHAGAGAG AGLHGGDHPF PLALSLDAAA  60
EASAKQDRDP VQLAGLFPPV FGGGVQQPHL RGPPPPQMFH AQPKPGEGAM APQPPAPRPK  120
VRARRGQATD PHSIAERLRR ERIAERMRAL QELVPNTNKT DRAAMLDEIL DYVKFLRLQV  180
KVLSMSRLGG AGAVAQLVSD IPLSVKGEAS DSGSTQQIWE KWSTDGTEKQ VTKLMEEDIG  240
AAMQFLQSKA LCMMPISLAM AIYDTQHPQD GHSLKPEPNT SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.23770.0callus| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955662.11e-169PREDICTED: transcription factor UNE12-like
SwissprotO227689e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLK3ZVS31e-169K3ZVS3_SETIT; Uncharacterized protein
STRINGSi030704m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-64bHLH family protein